What the command does | An example | Choosing the phylogeny program | Rooting | Numbering sites | When a fork has no clean difference | Identifying a sequence

What you need | The short version | Setup | Step 1: say which photo shows what | Step 2: load a vision model | Step 3: embed the photos | Step 4: build the key | Sniglets | Questions in words | Step 5: look at the key and share it | Step 6: rename the sniglets | How good is the key? | Identifying a new photo | Any model, no Python | Choosing a model: CLIP or BioCLIP

The problem: same mutation, many clades | Simulated data with known truth | Fitting a MECIT | A MECIT is a key | Random slopes | References